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2014-05-05_REVISION - C1996083
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2014-05-05_REVISION - C1996083
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Last modified
8/24/2016 5:43:46 PM
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5/5/2014 9:28:57 AM
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Template:
DRMS Permit Index
Permit No
C1996083
IBM Index Class Name
Revision
Doc Date
5/5/2014
Doc Name
Adequacy Review Response (2nd Response)
From
Bowie Resources, LLC
To
DRMS
Type & Sequence
MR150
Email Name
SLB
SB1
Media Type
D
Archive
No
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HISTORICAL DNA REVEALS EXTINCTIONS AND INVASIONS 11 <br />revision. Because these lineages are represented by <br />museum samples collected after the onset of intensive <br />fish stocking activities (1885) and they are the only <br />lineages not restricted to single drainages, their native <br />distribution and taxonomy remain uncertain. However, <br />we argue that the blue lineage is probably O. c. pleuriti- <br />cus. In both the historical and modern samples, the <br />Yampa River basin appears inhabited by cutthroat trout <br />of the blue lineage (Fig. 4B and Table S5). Importantly, <br />no green lineage cutthroat trout were detected in <br />modern Yampa River samples, a pattern also supported <br />by nuclear data previously generated for 59 Yampa <br />River populations (Rogers 2010). Thus, we infer that the <br />geographical range of the blue lineage was probably <br />restricted to the Yampa and Green River basins and <br />was not widely distributed historically across all major <br />drainages of the west slope. The type specimens of <br />O. c. pleuriticus were collected in the Green River drain- <br />age basin, which encompasses the Yampa River. <br />Therefore, these specimens probably harbour blue line- <br />age haplotypes, although this needs to be confirmed <br />with additional sampling of museum specimens. <br />Because O. c. pleuriticus was the only described subspe- <br />cies from the western slope, the green lineage may <br />represent an undescribed distinct taxon. This lineage <br />appears native to the Colorado and Gunnison rivers, <br />and potentially the Arkansas River basin. Although <br />considered separate basins, the Colorado and Gunnison <br />rivers converge well upstream of the warm desert con- <br />fluence with the Green River and its major tributary the <br />Yampa River. Cold water temperatures would have <br />allowed cutthroat trout to move between the Colorado <br />and Gunnison Rivers, giving rise to a monophyletic <br />group in those two basins. Given the significant barrier <br />between the east and western slopes of the Continental <br />Divide, we believe it is unlikely that the green lineage <br />was native to the Arkansas River drainage. Instead, we <br />believe that by the time the samples were collected in <br />1889, early stocking activities may have established this <br />lineage in the headwaters of the Arkansas River drain- <br />age. The Twin Lakes fishery, from which the samples <br />were collected, had already seen considerable fish <br />stocking activity by 1889 (Wiltzius 1985). Twin Lakes lie <br />near the first federal fish hatchery in Colorado, and just <br />a dozen miles south of the bustling city of Leadville, <br />the second most populous city in the state at the time. <br />Bringing back O. c. stomias <br />We believe the descendants of fish that were stocked <br />into Bear Creek are the last remaining representatives <br />of O. c. stomias, the greenback cutthroat trout currently <br />recognized as a threatened under the Endangered <br />Species Act. This fish was declared extinct in the 1930s <br />© 2012 Blackwell Publishing Ltd <br />(Green 1937); however, in 1953, a collection of fish from <br />a small stream in the South Platte drainage were identi- <br />fied as O. c. stomias (although not without uncertainty), <br />marking the 'rediscovery' of the greenback cutthroat <br />trout that would eventually launch an intensive <br />recovery effort. Conservation efforts aimed at restoring <br />O. c. stomias in the South Platte and Arkansas River <br />basins were based on taxonomic assessments that were <br />compromised by the extensive mixing of trout among <br />drainages that began in the late 1870s, however. Of the <br />streams and lakes in the South Platte and Arkansas <br />River basins that were subjected to trout removal and <br />restocking with what the best available science sug- <br />gested was O. c. stomias, all appear to harbour lineages <br />native to the western slope of the Continental Divide. <br />Currently, O. c. stomias appears to persist as a single <br />self- sustaining population in a locality outside the <br />native range of the subspecies. The population harbours <br />little genetic variation for loci that are typically variable <br />in cutthroat trout populations (Metcalf et al. 2007) <br />probably the result of few founding fish used in the <br />initial stocking effort or a subsequent population bottle- <br />neck. Low genetic diversity may compromise rehabilita- <br />tion of the taxon, making it essential that planned <br />propagation efforts attempt to maximize genetic diver- <br />sity and assess subsequent fitness. It is encouraging, <br />nonetheless, that the taxon has persisted within a <br />relatively short stretch of a small stream for more than <br />a century, suggesting it is likely to survive and perhaps <br />thrive in other places. <br />Conclusion <br />Regional diversity and distribution of many taxa in <br />North America have changed, sometimes dramatically <br />over the last 150 years (Rahel 2000). For trout native to <br />the Southern Rocky Mountains, anthropogenically <br />driven changes resulted in the extinction of some <br />lineages, and significant declines, range expansions or <br />range shifts of others. Our work comparing historical <br />records of trout propagation and movement with the <br />phylogenetic diversity of historical and modern samples <br />increased our understanding of the status of described <br />taxa and resulted in the rediscovery of a taxon, <br />O. c. stomias, that was at one time declared extinct. <br />Other threatened and endangered species may be <br />subject to similar uncertainty regarding their native <br />diversity and distribution (e.g. Boessenkool et al. 2009; <br />Athrey et al. 2011; Hekkala et al. 2011). In many cases, <br />historical specimens exist in museums that are available <br />for inferring native diversity and taxonomy. With <br />specimens collected up to 150 years ago, our study <br />pushes back the age for recovering DNA from ethanol - <br />preserved specimens for population -level studies by <br />
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