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pattern for each enzyme (Table 2, Appendix I). <br />Statistical analysis.- Several samples were excluded from statistical analyses due to small <br />sample sizes (e.g., CRIT canals, Little Colorado River). Because complete restriction <br />fragment profiles were not obtainable for all individuals (Table 2, Appendix I), two separate <br />sets of analyses were performed, one using the subset of individuals with composite <br />haplotypes for all enzymes and the other including all individuals with composite haplotypes <br />for only six base-pair (bp) enzymes. Because of its degenerate recognition sequence, BanI <br />may cleave the same site as HinPI (when Py=C and Pu=G); information from BanI therefore <br />was excluded from both distance calculations and phylogenetic analysis. <br />Levels of genetic diversity within samples were assessed by direct count of haplotypes <br />(i.e., alleles) corrected for sample size (nh) and estimates of haplotype diversity (h). <br />Haplotype diversity (Nei and Tajima, 1981) was calculated using the program REAP (version <br />4.0, McElroy et al., 1992). This value is frequently used to assess levels of mtDNA diversity <br />within a sample of individuals (e.g., Avise, 1992), providing a measure of the relative <br />contribution of each haplotype to the sample. High values (maximum=l.0) are found when <br />each genotype is equally represented. Low values (minimum=0.0) occur when specific <br />genotypes are over-represented. <br />Geographic heterogeneity in allele frequencies was also examined by Monte Carlo <br />simulation (Roff and Bentzen, 1989), using the program REAP. In the Monte Carlo <br />approach, a X2 test is performed to test for heterogeneity in the distribution of hapIotypes <br />among populations. Because of the typically small cell sizes in such analyses, it is necessary <br />to evaluate the power of the test by contrasting this value with x2 values calculated from <br />1000 new population by haplorype matrices produced by randomly sampling (with <br />replacement) the original data matrix. An original test value greater than those c~culated <br />5 <br />