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3. Determine the biological response of fish populations to <br />the reoperation of Navajo Dam. <br />4. Determine habitat use and needs of the Colorado <br />squawfish, razorback sucker, and roundtail chub in the <br />San Juan River. <br />5. Characterize water quality in the San Juan River and <br />identify critical quality issues that may affect recovery <br />of endangered species.. <br />6. Identify interactions between native and nonnative <br />fishes. <br />7. Identify and test management options which could improve <br />reproduction and recruitment of target species. <br />RESEARCH PLAN IbIPLEb~PiTATION - The Research Plan consists of an <br />integrated program designed to evaluate hypotheses related to flow <br />and habitat conditions in the San Juan. A series of hypotheses <br />were formulated by research biologists to guide the development of <br />the Research Plan. Hypotheses that were considered important to <br />test in the San Juan River included: <br />Late spring and early summer flows are important for spawning <br />and recruitment of Colorado squawfish and other native fish <br />species. <br />High spring flows affect trout production in the tailwaters of <br />Navajo Dam. <br />Seasonally flooded lowlands are important for razorback sucker <br />spawning. <br />Populations of endangered fish in the San Juan River Basin are <br />genetically distinct from other populations in the upper basin <br />of the Colorado River. <br />The abundance of native species is related to predation and <br />competition by non-native species. <br />Instream barriers affect migration of adult squawfish and <br />impact drifting larvae of Colorado squawfish and razorback <br />sucker. <br />The San Juan River, during certain hydrologic conditions, has <br />suitable habitat for successful spawning and rearing of <br />Colorado squawfish, razorback sucker, and other native fish <br />species. <br />Native and non-native fish species are affected by water <br />quality in the San Juan River and its tributaries. <br />4 <br />