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INTRODUCTION <br />Introduction and establishment ofnon-native fish in western rivers of the USA is a major <br />threat to conservation of native fish assemblages (Minckley and Deacon 1968, Stanford and <br />Ward 1986, Moyle et al. 1986, Carlson and Muth 1989, Minckley and Deacon 1991, Olden et al. <br />2006). In the upper Colorado River Basin, non-native fish invasions began over 100 years ago, <br />with introduction of channel catfish Ictalurus punctatus, common carp Cyprinus carpio, and <br />salmonids for sport fishery purposes. In the 1960's, small-bodied species such as red shiner were <br />relatively rare in the Green River sub-basin of the Upper Colorado River Basin (Vanicek et al. <br />1970), but by the 1970's were expanding rapidly (Holden and Stalnaker 1975a and 1975b). By <br />the 1980's, red shiner was a dominant species in low-velocity habitat used by early life stages of <br />native fishes, and potential negative effects of that species and other small-bodied fishes have <br />been documented (Haines and Tyus 1990; Dunsmoor 1993; Ruppert et al. 1993; Muth and <br />Snyder 1995; Bestgen et al. 1997; 2006). More recently, piscivores such as smallmouth bass <br />Micropterus dolomieu and northern pike Esox lucius have established and are common in the <br />lower Yampa River and the upper and middle Green River basins (Anderson 2002; 2005, <br />Bestgen et al. 2006, Finney 2006). The predatory threat of these large-bodied taxa is substantial <br />and control programs have been initiated to reduce their abundance and negative effects on <br />native fishes. <br />Altered flow, sediment, and temperature regimes in regulated rivers have also been <br />implicated as factors responsible for reduced distribution and abundance of native aquatic biota <br />in the Colorado River Basin (Petts 1984, Ward 1989, Ward and Stanford 1995, Stanford et al. <br />1996, Poff et al. 1997). In these snow-melt dominated streams, dams reduce spring discharge <br />maxima, which disrupts channel-flood plain interactions and channel forming processes. Deep- <br />releases from reservoirs reduce spring, summer, and autumn water temperature downstream from <br />dams and cause shifts in composition of fish and invertebrate communities from warm <br />stenothermic native species to non-indigenous cold-tolerant eurytherms (Holden 1979, Ward and <br />Stanford 1979, Stanford et al. 1996). Remnant populations of native fishes may persist as long- <br />1 <br />