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<br />each system for the target species. The number of specimens collected was based on the rate of <br />encounter. When fish were abundant we would collect sufficient numbers for our study. <br />However if specimens were rare we would reduce the number of specimens taken because of the <br />potential of negatively impacting individual populations. As stated in the proposal, we hoped to <br />obtain a minimum of twelve individuals of each of the species from each of four sites in each <br />major river system. <br /> <br />Field Work <br /> <br />, Sample collection and handling: <br /> <br />The collections were made with either a Smith-Root backpack shocker or seines. When state or <br />tribal fisheries biologists accompanied us on the collections we utilized their electrofishing <br />equipment. Prior to all trips we notified the appropriate regional biologists/managers, often also <br />obtaining advice on the best locations for collecting the specimens needed as well as receiving <br />information on the location of populations from which the state did not want specimens <br />removed. <br /> <br />A standard protocol was followed for preserving specimens (both fin tissue and whole specimens <br />were collected in the study). <br /> <br />Alcohol preserved samples - whole fish and fin clips for DNA analysis. <br /> <br />1. We used gallon containers and alcohol for preserving whole specimens. Small 2.4 ml <br />polypropylene vials were used to hold the fin clips. The whole fish were fixed in 70% ETOH. <br />Fin clips were placed in 95% ETOH. <br /> <br />2. Whole fish were between 3.5 and about 30 cm in length. A range of 15-25 cm is ideal <br />but we kept larger fish at one site and fixed them in a 10% buffered formalin solution. Small fish <br />(2.5-8 cm) will yield adequate DNA. Fin clips were approximately 1 to 2 cm on a side, roughly <br />1/2" square. <br /> <br />3. We attempted to collect between 15 and 30 fish per population. If the population <br />numbers seemed very low, we collected fewer than our goal, as we are able to obtain data from a <br />sample size of 10-12. As a general rule, if many fish cannot be collected from a population and <br />mainly fin clips are taken, it is still useful to have some whole specimen vouchers archived in the <br />museum for future study. For this, about 12 fish per population is adequate. <br /> <br />4. When alcohol preservation of whole fish specimens was used, we killed the fish with an <br />overdose of MS222. Fish that were to be released were anesthetized prior to having the fm <br />clipped. <br /> <br />5. We have found considerable variability in the quality of DNA from alcohol preserved <br />fish, while fin clips have given excellent DNA yields. This is probably because we often use <br />internal tissues (muscle) for DNA extraction from whole specimens (to minimize damage to the <br />fins of the voucher specimens), and if the fish is not fixed rapidly, significant DNA degradation <br /> <br />2 <br />