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12 <br />' Conclusions <br />Our analyses of allozyme variability in Colorado pikeminnow population samples will be presented <br />' pursuant to five major areas of interest: 1) allelic variability in wild adult Colorado pikeminnow; 2) allelic <br />variability in juvenile and YOY Colorado pikeminnow individuals; 3) allelic variability in captive hatchery <br />Colorado pikeminnow populations; 4) genetic management implications in development of hatchery <br />' populations and use of hatchery fish for reintroduction into natural populations; and 5) implications of <br />allele frequency estimates in wild and captive Colorado pikeminnow populations for genetic management. <br />Allozyme variability in wild adults. No clustering of alleles within river basins was apparent, <br />meaning that alleles were more or less evenly dispersed throughout collection sites. Even with very small <br />sample size (most likely reflecting scarcity of pikeminnow in the river), the San Juan River sample appears <br />to have lost genetic diversity, probably through genetic drift accompanying population bottlenecks and <br />reductions in immigration. The lack of observed genetic differentiation is consistent with hypotheses of <br />panmixia, but does not exclude the possibility of past differentiation maintained by behavioral isolation but <br />now precluded by habitat disturbance or anthropogenic barriers. Also, stocking of Colorado pikeminnow <br />for more than 16 years may have masked any differentiation that existed. Colorado pikeminnow were <br />stocked into the White River and Colorado River systems with fish produced from Yampa River fish and <br />into the San Juan River using fish produced from mixed Colorado/Green River broodfish (see Appendix 1; <br />Table 1). <br />Allozyme variability in juveniles. Juvenile Colorado pikeminnow could be wild individuals or <br />reintroduced young Colorado pikeminnow from hatchery stocking in the early to mid 1980s. Allele <br />frequency data are insufficient to support either hypothesis with certainty. <br />Allozyme variability in young-of-the-year. While a few individual allele frequency comparisons <br />approach statistical significance, the vast majority of alleles exhibited a conspicuous lack of geographic <br />differentiation. Six alleles at frequencies < 0. 10 were found in both Colorado River and Green River <br />samples; the three basin-restricted alleles all were found at frequencies < 0.01. As in the study of <br />Ammerman and Morizot (1989), an overall lack of genetic differentiation within and between river basins <br />is apparent. <br />Genetic variability in hatchery populations. Ammerman and Morizot (1989) concluded that the <br />Colorado-Green River DX-F,(81) and Yampa River DX-F2(87) populations reflected allele frequencies <br />estimated from wild YOY samples; expansion of sampling in this study suggests that founder effects may <br />have significantly increased and decreased frequencies of the GPI-I*A and ES2*b alleles, respectively, <br />relative to wild populations. Of the five apparently basin-specific alleles identified to date (GR *b, TPI-I <br />*a, and TPI-2*a in the Green River and GPI-2 *c and PEPS*B in the Colorado River), only GR*b was <br />detected in the adult broodfish sampled here. Analysis of the Yampa River DX-F2(91) captive population <br />' sample proved noteworthy in that six additional polymorphic loci were observed. Liver samples permitted <br />resolution of LDH-3 and BGAL, both shown to be polymorphic by Ammerman and Morizot (1989). <br />Newly identified polymorphisms of as yet unknown geographic differentiation were detected at GPDj, <br />AIEp-1, aGLU-2, and ACP-1, with less common alleles ranging from 0.02 - 0.25. <br />Implications of allele frequency estimates.- The new polymorphic loci and alleles identified in the <br />present study compel a reevaluation of the suitability of current hatchery populations maintained as refugia <br />for future reintroduction. The discovery of several rare alleles that may be liver-specific indicates a need <br />for full characterization and monitoring of hatchery populations to insure maintenance of genetic <br />variability. Geographic distributions of uncommon alleles further suggest that hatchery populations be <br />' derived from Colorado River and Green River and/or Yampa River individuals, rather than the currently <br />available populations from mixed Colorado River and Green River individuals segregated from a Yampa