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Monitoring for adult Colorado pikeminnow currently occurs every year on the San Juan River. <br /> hi 2013, 149 Colorado pikeminnow were collected during monitoring from RM 180-77, the <br /> eighth consecutive year that more than 100 Colorado pikeminnow were caught in this reach <br /> (Schleicher 2014). However, only 7 of these fish were greater than 450 mm (18 in). In addition, <br /> 19 Colorado pikeminnow greater than 450 mm (18 in)were collected during the non-native fish <br /> removal trips in 2013 (Duran et al. 2014). In order to downlist the species,the San Juan River <br /> population of Colorado pikeminnow must reach at least 1,000 Age-5 fish (Service 2002). <br /> The majority of individuals come from hatchery reared stocks supported by the San Juan River <br /> Recovery Implementation Program. This program has stocked more than 2 million age 0 and <br /> age 1+fish in the San Juan River since 2002 (Fury and Davis 2009). River wide population <br /> estimates for age-2+pikeminnow that have been in the San Juan River at least one year was <br /> approximately 4,600 and 5,400 individuals in 2009 and 2010,respectively(Duran et al. 2010; <br /> 2013). However,because few adult Colorado pikeminnow were detected in the San Juan River, <br /> this population estimate largely consists of juveniles. Other Colorado pikeminnow abundance <br /> estimates exhibit substantial annual variation, likely due to the effects of short-term retention <br /> from recent stocking events,but no clear population trends were evident in the San Juan River <br /> Basin (Durst 2014). <br /> Successful Colorado pikeminnow reproduction was documented in the San Juan River in 1993, <br /> 1995, 1996, 2001, 2004, 2007, 2009-2011, and 2013. A total of 58 larval Colorado pikeminnow <br /> were collected since 1993 (Farrington and Brandenburg 2014); however, there has been little to <br /> no recruitment documented in the San Juan River. A total of 48 Age-1+ Colorado pikeminnow <br /> were collected in 2013; all presumably the result of augmentation efforts (Farrington and <br /> Brandenburg 2014). Since 1998, Colorado pikeminnow were collected during small-bodied <br /> monitoring every year except 2001-2003; however,young of year(YOY) Colorado pikeminnow <br /> were stocked in each of these years prior to monitoring efforts so these fish were likely <br /> hatchery-reared (Service 2015b). Larval Colorado pikeminnow detections occurred throughout <br /> the San Juan River from Reach 4 (RM 106-130) downstream to Reach 1 (RM 0-16) (Farrington <br /> and Brandenburg 2014, Service 2015b). Franssen et al. (2007) found that maintenance of a <br /> natural flow regime favored native fish reproduction and provided prey at the appropriate time <br /> for Age-1 Colorado pikeminnow. <br /> Tissue samples from Colorado pikeminnow caught during research conducted under the <br /> Recovery Program have been analyzed as part of a basin-wide analysis of endangered fish <br /> genetics. The results of that analysis indicate that the San Juan River fish exhibit less genetic <br /> variability than the Green River and Colorado River populations, likely due to the small <br /> population size,but they were very similar genetically to pikeminnow from the Green, Colorado, <br /> and Yampa rivers (Morizot in lift. 1996). These data suggest that the San Juan population is <br /> probably not a separate genetic stock(Holden and Masslich 1997; Houston et al. 2010). <br /> To summarize, the Colorado pikeminnow was quite rare in the San Juan River in the 1990s,with <br /> an estimate of less than 50 adults. Since 2002, millions of young Colorado pikeminnow have <br /> been stocked into the river. Adult fish are still rather uncommon, however, and not nearly at the <br /> level yet needed for recovery. Despite low numbers of adults,reproduction is occurring to some <br /> extent, but recruitment is low. Most of the Colorado pikeminnow in the San Juan River are <br /> 13 <br />