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Biological Assessment <br /> Federal Coal Lease Modification(COC-62920)and Federal Mine Permit(CO-0106A)Revision and Renewal <br /> ■ Changes in snowpack, streamflow timing, and hydrograph evolution may affect reservoir <br /> operations, including flood control and storage. Changes in the timing and magnitude of <br /> runoff may affect functioning of diversion, storage, and conveyance structures. <br /> ■ Earlier runoff may complicate prior appropriation systems and interstate water compacts, <br /> affecting which water-rights holders receive water, and operations plans for reservoirs. <br /> ■ Changes in water quality. For example, changes in the timing and hydrograph may affect <br /> sediment load and contaminant concentrations. <br /> ■ Warmer air temperatures may place higher demands on hydropower reservoirs for <br /> peaking power. Warmer lake and stream temperatures may affect water use by cooling <br /> power plants and in other industries. <br /> ■ Increasing temperature and soil moisture changes may shift mountain habitats toward <br /> higher elevation. <br /> ■ Changes in air, water, and soil temperatures may affect the relationships between forests, <br /> surface water and groundwater, wildfire, and insect pests. Water-stressed trees, for <br /> example, may be more vulnerable to pests. <br /> ■ Stream temperatures are expected to increase as the climate warms, which could have <br /> direct and indirect effects on aquatic ecosystems, including the spread of in-stream non- <br /> native species and diseases to higher elevations, and the potential for non-native plant <br /> species to invade riparian areas. Changes in streamflow intensity and timing may also <br /> affect riparian ecosystems. <br /> ■ Changes in reservoir storage, streamflow intensity and timing, the character and timing of <br /> snowpack, and the ratio of snowfall to rainfall may affect recreation activities. <br /> ■ Changes in long-term precipitation and soil moisture can affect groundwater recharge <br /> rates; coupled with demand issues, this may mean greater pressures on groundwater <br /> resources. <br /> Climate change is further discussed in Section 6, Effects Analysis. <br /> 4.3 Water Quality <br /> The water quality baseline described in this section includes summaries of baseline conditions in <br /> water bodies potentially affected by the Proposed Action that also provide habitat for federally <br /> listed species. <br /> San Juan River <br /> Water quality is of concern in the San Juan River Basin with many water bodies, including the <br /> San Juan River, being impaired due to one or more factors, including metals, sediment, salinity, <br /> temperature, fecal matter, and dissolved oxygen (USFWS 2006). Osmundson and Lusk(2011), <br /> AECOM (2013), and Electric Power Research Institute (2014)identified mercury or selenium as <br /> moderately elevated contaminants of concern in biota and fish tissues collected from the San <br /> July 2017 <br /> 13 <br />