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<br />-, <br /> <br />EXECUTIVE SUMMARY <br /> <br />The San Juan River is historic habitat for seven native fish species <br />including three rare fish species: the Colorado squawfish (Ptvchocheilus <br />lucius), razorback sucker (Xvrauchen texanus), and roundtail chub (Gila <br />robusta). In 1993, the U.S. Fish and Wildlife Service's Colorado River <br />Fishery Project (CRFP) office in Grand Junction, Colorado, in cooperation with <br />other state and federal agencies, conducted electrofishing surveys on the <br />lower mainstem San Juan River. The primary responsibility of the CRFP office <br />is to monitor the juvenile and adult fish community in the river's main <br />channel habitat. <br />The river was electrofished from river mile (RM) 179.0 (Farmington, New <br />Mexico; Reach I) to RM 2.9 (Clay Hills Boat Landing; Reach VII), during two <br />sampling trips. All seven river reaches were sampled once each during 1993. <br />In addition, two Colorado squawfish "hunts. were conducted in April and May. <br />The purpose of these trips was to implant radio tags into adult Colorado <br />squawfish for another study. The most abundant species collected was <br />flannelmouth sucker (Catostomus latioinnis), followed in descending order by <br />bluehead sucker (Catostomus discobolus), channel catfish (Ictalurus <br />ounctatus), and common carp (Cvorinus caroio). <br />Fish community composition did not change drastically from 1991-1992, <br />however some differences were noted in 1993. Catch rates for all species were <br />down riverwide from 1992. Common carp and channel catfish accounted for only <br />15% of the total catch in 1993, lower than in previous years. All other <br />introduced species accounted for only 3% of the total catch. Among these was <br />the first recorded capture of a grass carp (Ctenooharvnqodon idella), near <br />Aneth, Utah. Native species, mostly flannelmouth sucker and bluehead sucker, <br />composed B2% of the total catch in 1993, up from previous years. Colorado <br />squawfish and roundtail chub combined again composed less than 1% of the total <br />catch. Electrofishing capture rates were highest for flannelmouth sucker and <br />bluehead sucker in Reach III (Shiprock, New Mexico to Four Corners Bridge), <br />while catch rates for speckled dace (Rhinichthvs osculus) were highest in <br />Reach II (Hogback Diversion, New Mexico to Shiprock). The three most abundant <br />nonnative species--channel catfish, common carp, and red shiner--had their <br />highest catch rates in Reaches IV (Four Corners Bridge to Aneth, Utah), II, <br />and VII (Mexican Hat, Utah to Clay Hills Boat Landing, Utah), respectively. <br />Catch rates for most species showed a downward trend as sampling proceeded <br />downriver from Hogback Diversion. Examination of the population size <br />structure of the four most abundant species captured over the last three years <br />revealed that both flannelmouth sucker and channel catfish populations showed <br />distinct shifts from larger to smaller fish in downriver reaches. Common carp <br />had more juvenile fish in their population in 1993 than in 1991 and 1992. <br />Five Colorado squawfish and two roundtail chub were collected in 1993. <br />Only one of the Colorado squawfish was collected during a standardized adult <br />monitoring trip, all others were collected during special Colorado squawfish <br />"hunt" trips. No razorback sucker were collected. Four of five Colorado <br />squawfish were captured in Reach II', as were both roundtail chub. The fifth <br />Colorado squawfish was captured in Reach VI (Bluff to Mexican Hat, Utah). <br />This is the most downstream capture of an adult Colorado squawfish in the <br />mainstem San Juan River. <br />All five Colorado squawfish were surgically implanted with radio tags and <br />tracked year-round from the air and ground. Fifty-one radio contacts were <br />made with these fish between January and December 1993. For the third year in <br />a row radio-tagged Colorado squawfish demonstrated an affinity for the area in <br /> <br />I' " <br />