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<br />606 1996, Colorado pikeminnow were stocked near Shiprock and Mexican Hat (River Miles 148 and <br />607 53) and at least some of these are surviving in the river (Ryden. 2000). <br /> <br />608 Habitat of the fish in the San Juan River includes a complex mix oflow-velocity habitats such as <br />609 eddies, pools, and backwaters adjacent to swifter run and riffle habitats. A natural hydrograph <br />610 (high spring flows, lower base flows) is important in maintaining the habitat and one of the main <br />611 effects of Navajo Reservoir under historic operations has been to reduce high spring flows while, .,:, <br />612 increasing base flows. Miller and Ptacek (2000) and Holden (1999) discuss habitat types <br />613 seasonally used by the pikeminnow and should be referred to for specific information. Habitat <br />614 types used varies seasonally. During the pre-spawn period, pikeminnow use mainly slower <br />615 velocity habitats, including mouths of tributaries such as the Mancos River. During spawning, <br />616 higher velocity and often complex habitat areas are used. Following spawning the fish move into <br />617 simpler habitat complexes such as runs and pools; and runs provide fall and winter habitat <br />618 Juvenile fish prefer shallow, low velocity habitats including backwaters, shoals, eddies, and <br />619 pools. These low velocity habitats comprise less than 15 percent of the rivers' habitats (Bliesner <br />620 and Lamarra, 1996). <br /> <br />621 Loss of habitat, competition from non-native fish, water quality problems, and migration barriers <br />622 are all be factors in the fishes' decline. Reductions of water temperatures due to the operation <br />623 of Navajo Reservoir may also be a factor in reducing the range of the species, and habitat in the <br />624 lower river was lost when Lake Powell was filled. Larval fish that drift into Lake Powell may all <br />625 be lost due to predation. <br /> <br />626 Non-native fish are common throughout the critical habitat reach and include channel catfish, <br />627 carp, fathead minnows, and other species. During monitoring trips on the river in 2000, striped <br />628 bass were common (SJRBRIP, 200Ib). Striped bass represent a predatory threat to native fish. <br /> <br />629 There are five major diversion structures between RM 142 and RM 178, which impede fish <br />630 movement to varying degrees (Masslich and Holden, 1996); and this may strongly influence the <br />631 range of the pikeminnow which is a migratory species. A fish passage has been completed at the <br />632 Hogback Diversion and one is scheduled for the Public Service Company of New Mexico (PNM) <br />633 Diversion. <br /> <br />634 There is potential that water contaminants may also affect the fish; these include selenium and <br />635 PAH's. Further studies are needed to determine if water quality in the main river and in tributary <br />636 inflow areas are affecting the species. <br /> <br />637 The flow recommendations are specifically designed to create and protect habitats used by the <br />638 fish (Holden, 1999). Higher spring flows (>10,000 cfs) generate new cobble sources, channel <br />639 diversity, and provide nutrient loading. Lower peaks provide and maintai~ spawning habitat <br />640 The proposed operation should meet or exceed recommendations for spring flows. Table 4 <br />641 indicates how the frequency of spring flows are met under the proposed action and No Action <br />642 alternatives. Overall, the No Action altemative fails to meet the desired frequency and duration <br /> <br />21 <br /> <br />..... <br />