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<br />c.:) <br />c' <br />..... <br />00 <br />eo <br />OD <br /> <br />Bliesner and Lamarra (2000) searched portions of the upper half of the San Juan River study area for <br />potential Colorado pikeminnow spawning habitat. They found several potential sites with cobble <br />characteristics (cleanliness and size) similar to the two known spawning sites (RM 131 and RM 132) <br />identified by Miller and Ptacek (2000) and other spawning sites in the Yampa and Colorado rivers. The <br />filirly large Colorado pikeminnow population in the Green and Yampa rivers uses two major spawning <br />areas, suggesting that the San Juan River can supply needed spawning areas for a relatively large population <br />of Colorado pikeminnow, as well as razorback sucker and other native species that need clean cobble <br />spawning bars. <br /> <br />Habitat for flannehnouth sucker (all habitats), bluehead sucker (riffles), and speckled dace (riffles) is <br />common and abundant in the San Juan River. Because flannehnouth sucker use a variety of habitats, they <br />are common throughout much of the river. Habitat was not limiting for this species; flannehnouth sucker <br />abundance, which is higher in the San Juan River than in other Upper Basin systems (Ryden 2000a), <br />suggested habitat for this species is more abundant in the San Juan River than in other rivers. Bluehead <br />sucker and speckled dace were also abundant. Their key habitat, riffles, was also abundant, especially <br />during low-flow periods (Figure 3.5). Habitat for these two native species was not limiting in the Sanjuan <br />River. Habitats for roundtail chub (pools and eddies) were rare, but as seen for stocked Colorado <br />pikeminnow and razorback sucker, rareness does not make a habitat limiting for the relatively small <br />populations of these species; the case may be the same for roundtail chub habitat. <br /> <br />The endangered fishes used portions of the river that had high habitat richness. Figure 3.11 shows how <br />habitat richness varied throughout the entire ISO-mile study area at high flow (June 1994) and low flow <br />(January 1996). This graph was developed from habitat mapping runs made by Bliesner and Lamarra <br />(2000), and it reflects the average richness (number of habitat types) for overlapping 300-meter sections <br />of the river with center points eve1Y ISO meters. Average richness by mile was genernlly less than five <br />habitats per 300-meter reach. Areas selected by Colorado pikeminnow and razorback sucker averaged <br />six to nine habitats, indicating that the fish selected relatively rare sections of the river. To examine the <br />distribution of 300 meter reaches with higher richness, an exceedence evaluation by GeomOlphic Reach <br />was performed (Table 3.3). These data indicated that during both high and low flows, Reaches 1 and 2 <br />have ve1Y few 300-meter reaches with more than five habitats, and richness is generally highest in Reach <br />5, the area containing the Mixer and Colorndo pikeminnow spawning areas. <br /> <br />Another way to evaluate habitat richness was to look at the number of total habitats (versus total habitat <br />types) within a river reach. Figure 3.12 shows total habitat counts from mapping runs (Bliesner and <br />Lamarra 2000) for the study area at three flow levels. Total habitat count is lowest in Reaches I and 2 <br />(RM 0 to RM 70), and it peaks around RM 130 in the Mixer. In the lower river, habitat count peaked at <br />low flows, whereas in most of the remainder of the river it peaked at medium or high flows. 1bis likely <br />reflects the canyon area in the lower river, which is ve1Y habitat poor during high flows but increases in <br />richness as flows recede. Higher values in the upper river result from flooding of areas that create more <br />secondary channels and other habitat features adding to habitat richness. <br /> <br />September 2000 <br /> <br />3-26 <br /> <br />Program Evaluation Report <br />