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<br />Bliesner and Lamarra (2000) searched portions of the upper half of the San Juan River study area <br />for potential Colorado pikeminnow spawning habitat. They found several potential sites with <br />cobble characteristics (cleanliness and size) similar to the two known spawning sites (RM 131 and <br />RM 132) identified by Miller and Ptacek (2000) and other spawning sites in the Yampa and <br />Colorado rivers. The fairly large Colorado pikeminnow population in the Green and Yampa rivers <br />uses two major spawning areas, suggesting that the San Juan River can supply needed spawning <br />areas for a relatively large population of Colorado pikeminnow, as well as razorback sucker and <br />other native species that need clean cobble spawning bars. <br /> <br />Habitat for flannelmouth sucker (all habitats), bluehead sucker (riffles), and speckled dace (riffles) <br />is common and abundant in the San Juan River. Because flannelmouth sucker use a variety of <br />habitats, they are common throughout much ofthe river. Habitat was not limiting for this species; <br />flannelmouth sucker abundance, which is higher in the San Juan River than in other Upper Basin <br />systems (Ryden 2000a), suggested habitat for this species is more abundant in the San Juan River <br />than in other rivers. Bluehead sucker and speckled dace were also abundant. Their key habitat, <br />riffles, was also abundant, especially during low-flow periods (Figure 3.5). Habitat for these two <br />native species was not limiting in the San Juan River. Habitats for roundtail chub (pools and <br />eddies) were rare, but as seen for stocked Colorado pikeminnow and razorback sucker, rareness <br />does not make a habitat limiting for the relatively small populations of these species; the case may <br />be the same for roundtail chub habitat. <br /> <br />The endangered fishes used portions of the river that had high habitat richness. Figure 3.11 shows <br />how habitat richness varied throughout the entire 180-mile study area at high flow (June 1994) and <br />low flow (January 1996). This graph was developed from habitat mapping runs made by Bliesner <br />and Lamarra (2000), and it reflects the average richness (number of habitat types) for overlapping <br />300-meter sections of the river with center points every 150 meters. Average richness by mile was <br />generally less than five habitats per 300-meter reach. Areas selected by Colorado pikeminnow and <br />razorback sucker averaged six to nine habitats, indicating that the fish selected relatively rare <br />sections of the river. To examine the distribution of 300 meter reaches with higher richness, an <br />exceedence evaluation by Geomorphic Reach was performed (Table 3.3). These data indicated that <br />during both high and low flows, Reaches I and 2 have very few 300-meter reaches with more than <br />five habitats, and richness is generally highest in Reach 5, the area containing the Mixer and <br />Colorado pikeminnow spawning areas. <br /> <br />Another way to evaluate habitat richness was to look at the number of total habitats (versus total <br />habitat types) within a river reach. Figure 3.12 shows total habitat counts from mapping runs <br />(Bliesner and Lamarra 2000) for the study area at three flow levels. Total habitat count is lowest <br />in Reaches I and 2 (RM 0 to RM 70), and it peaks around RM 130 in the Mixer. In the lower river, <br />habitat count peaked at low flows, whereas in most of the remainder of the river it peaked at <br />medium or high flows. This likely reflects the canyon area in the lower river, which is very habitat <br />poor during high flows but increases in richness as flows recede. Higher values in the upper river <br />result from flooding of areas that create more secondary channels and other habitat features adding <br />to habitat richness. <br /> <br />September 2000 <br /> <br />3-26 <br /> <br />Program Evaluation Report <br /> <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />