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<br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br />I <br /> <br />001025 <br /> <br />Figure 3.5 also shows the distribution ofthe general habitat categories in the study area. Because <br />run habitat dominates the San Juan River, the scale on this figure was adjusted so that rarer habitat <br />categories could be compared. Key habitats for the endangered fishes are fairly well distributed <br />across the study area, except for the section from RM 20.0 to about RM 65.0, which is generally <br />within Reach 2. This canyon-bound area has very few backwaters at any flow. It has relatively <br />high amounts of slackwater and low-velocity habitats at all flows, and it has little inundated <br />vegetation during high flows because of the canyon. The lack of backwater habitat in this section <br />is the likely reason why stocked YOY Colorado pikeminnow retention was low in this reach. <br /> <br />Key habitats for adult Colorado pikeminnow and razorback sucker included edge pools, pools, <br />eddies, slackwaters, and backwaters. These habitats fit into the low-velocity, slackwater, and <br />backwater habitat categories (Table 3.2). Figure 3.7 shows the amount of pool and eddy habitat <br />at various flow levels. Pool habitat area declined with increased flow, whereas eddy habitat <br />increased with increased flow. Eddies were most available during high-flow periods, and pools <br />were most available during low-flow periods. The two endangered fishes' habitat use followed this <br />same pattern; eddies were used extensively during high-flow periods, and pools and eddies were <br />used at lower-flow periods, suggesting the fish used the type oflow-velocity habitat most available <br />at the time. <br /> <br />Slackwater habitats did not change with flow (Figure 3.8) (Bliesner and Lamarra 2000). Backwater <br />habitats, used by adult fish during high-flow periods and by YOY during late summer and autumn, <br />were generally most abundant at low-flow periods, and varied at medium- and high-flow periods <br />by reach. Reaches I and 2 were similar, as were Reaches 3, 4, and 5, but these two groups of <br />reaches differed from each other (Figures 3.9 and 3.10). This variation in the relationship of the <br />amount of backwater habitat versus flow results from the timing of flushing flows that clean the <br />backwaters and the timing of the habitat mapping runs in relation to storm events and flushing <br />flows (Bliesner and Lamarra 2000). Even though backwater habitat varied with flow and varied <br />with the timing of flushing flows, stocked YOY Colorado pikeminnow primarily used backwater <br />habitats and survived well in the San Juan River (Trammel and Archer 2000). This suggests that, <br />even in low abundance, backwater habitat was sufficient for at least the number of stocked fish that <br />survived in the San Juan River. It remains to be seen if this habitat type is sufficient for a larger, <br />self-sustaining population of Colorado pikeminnow. Flooded vegetation was used by stocked <br />razorback sucker during the high-flow period. As shown in Figure 3.7, that is the only time this <br />habitat type is available. <br /> <br />Larval and YOY razorback sucker habitat use was not determined for the San Juan River. Flooded <br />bottomland habitat, similar to that used by razorback sucker along the Green River, was essentially <br />non-existent along the San Juan River because of its narrow floodplain, steep floodplain gradient, <br />and lack of water-holding floodplain depressions. Inundated vegetation was an available habitat <br />during high-flow periods in the San Juan River, but it disappeared rather quickly as flows receded <br />(Figure 3.5). <br /> <br />September 2000 <br /> <br />3-21 <br /> <br />Program Evaluation Report <br />