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consultation period was extended for the length of the research <br />period (7 years) so as to incorporate findings into the Biological <br />Opinion. Similarly, formal consultation was requested by BIA for <br />the last three blocks of NIIP (9-11), with an extension of the <br />consultation period to coincide with the length of the research <br />effort . <br />Specific requirements were outlined in the Reasonable and Prudent <br />Alternatives formulated for the jeopardy opinions for Animas-La <br />Plata and NIIP (Blocks 1-8). In addition, Reclamation agreed to <br />implement a seven year research program for the endangered fishes <br />of the San Juan River Basin to gather information on the effects of <br />modifying operations at Navajo Dam.. Development of a long term <br />Recovery Program with representation from State, Federal, Tribal <br />and Private interests was also initiated concurrently with the <br />Research Program. <br />STUDY AREA - The San Juan River is a major tributary of the <br />Colorado River in the upper basin of the Colorado River drainage. <br />The river arises in the mountains of southwestern Colorado and <br />flows through northwestern New Mexico and southeastern Utah before <br />entering Lake Powell at the Colorado River confluence (Figure 1). <br />In Colorado and northern New Mexico, the river passes through <br />rugged terrain, exhibits relatively high gradient, with the flow <br />generally restricted to a single channel. An approximate 30 River <br />Mile (RM) reach of this section is inundated by Navajo reservoir. <br />Tributary streams to this reach are the Los Pinos, Navajo, and <br />Piedra rivers. <br />Below Navajo Dam, the gradient flattens considerably and the river <br />begins to meander. From Navajo Dam to Fruitland the gradient <br />remains moderately low, with some braiding, usually limited to one <br />or two channels with islands. Beginning at about Fruitland, <br />channel braiding increases. The largest tributary stream to the <br />San Juan River, the Animas River, is confluent at Farmington, New <br />Mexico. The La Plata and Mancos rivers also enter the San Juan <br />River in this reach. <br />Braiding between Four Corners and Aneth is slightly reduced and the <br />gradient continues to decrease. From Aneth to just below Bluff <br />braiding continues to be moderate and the slope remains relatively <br />constant at its lowest average slope until reaching the San Juan <br />arm of Lake Powell. McElmo and Montezuma creeks enter the San Juan <br />River downstream of Aneth. <br />About 10 RM below Bluff, the river enters a canyon-bounded reach. <br />The slope increases to about the river gradient near Shiprock and <br />the river becomes a single channel, before entering Lake Powell. <br />Prior to construction of Lake Powell, there was another low <br />gradient, braided channel reach beginning at the now-inundated <br />confluence with the Colorado River and stretching upstream for <br />about 60 RM. Recent declines in surface elevation of Lake Powell <br />2 <br />