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In both periods, the three most abundant native fish species captured by electrofishing <br />were flannelmouth sucker, bluehead sucker, and mountain whitefish. All other native taxa were <br />relatively rare in electrofishing samples. In 2005-2006, roundtail chub declined notably in <br />electrofishing samples as did bonytail, and no humpback chub were collected by electrofishing. <br />The percent of native fishes increased during 2005-2006 due mostly to increased abundance of <br />flannelmouth sucker and mountain whitefish. <br />Seining yielded eight native and 17non-native species, and four hybrids in 2002-2004 <br />(Table 7). Red shiner, sand shiner, fathead minnow, and redside shiner, in descending order of <br />abundance, were the most abundant non-native taxa collected in 2002-2004. Red shiner, sand <br />shiner, white sucker, redside shiner, and fathead minnow were the most abundant non-native <br />taxa collected in 2005-2006. Although relatively uncommon, smallmouth bass increased in <br />abundance in seine samples from 0.2% in 2002-2004 to 2.0% 2005-2006, an order of magnitude <br />change in relative abundance. Flannelmouth sucker, bluehead sucker, mountain whitefish, and <br />speckled dace, in descending order of abundance, were the most common native fishes collected <br />in the Green River in 2002-2004. In 2005-2006, bluehead sucker, flannelmouth sucker, speckled <br />dace, roundtail chub, and mottled sculpin, in descending order of abundance, were the most <br />common native fishes. <br />Non-native fishes were 92.4% of all fishes captured in seine samples in 2002-2004, but <br />declined to 76.5% in 2005-2006, due mostly to increased abundance of native bluehead and <br />flannelmouth sucker and roundtail chub. High non-native fish abundance in each period in seine <br />samples reflected the dominance of small-bodied red shiner, sand shiner, and fathead minnow in <br />the low-velocity habitats where most samples were collected. Those taxa dominated the fish <br />community in low-velocity habitats in other areas of the Colorado River Basin (Haines and Tyus <br />1990; Propst and Gido 2004) such as in backwaters of the middle and lower Green River, where <br />Haines and Tyus (1990) found that those species comprised about 90% or more of the fish <br />community. However, higher native fish abundance in seine samples collected in low-velocity <br />nearshore areas was documented in portions of the Yampa River in Little Yampa Canyon as <br />recently as 1999., when native fishes including roundtail chub, speckled dace, and flannelmouth <br />21 <br />