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canyons as a result of construction and operation of Flaming Gorge Dam. We characterized flow <br />differences in the historical period (Lodore Canyon, Greendale gauge, # 09234500, RK 660, <br />1951 to 1962; Whirlpool Canyon, Jensen gauge # 09261000, RK 486.2, 1946 to 1962), apost- <br />impoundment period (1962 to 1991), apost-Biological Opinion period (1992-1996), and a recent <br />(1997 to 2006) period which was thought to represent conditions that affected the fish <br />communities during this investigation. We used the gauge near Jensen, Utah, to characterize <br />Whirlpool Canyon and Island-Rainbow Park flows because the few small tributaries present <br />between Whirlpool Canyon and the downstream gauge will not affect flow estimates <br />appreciably. <br />Fish sample data analysis and presentation.-Composition of the fish community in the <br />study area (Fig. 1) was calculated for samples collected in the 2002 to 2004 period for each gear <br />type, and also for the 2005 to 2006 period. We grouped samples in this manner because 2002- <br />2004 data were reported previously (Bestgen et al. 2006), and it made sense to compare those <br />findings with more recent data collected in 200.5 and 2006. Longitudinal and temporal shifts in <br />community composition were characterized by partitioning samples into reaches for large-bodied <br />fishes captured primarily by electrofishing in the periods 1994 to 1996, 2002 to 2004, and 2005 <br />and 2006. Seine sampling data was used to supplement observations gathered for large-bodied <br />fishes, but that data is not extensively featured here. In some cases, we cite the recent and <br />extensive analyses in Bestgen et al. (2006) rather than duplicate those results here. Samples <br />were from eight contiguous Green River reaches: a Browns Park reach, four 8-RK Lodore <br />Canyon reaches, upper and lower Whirlpool Canyon reaches (9 and 8 RK) and the Island- <br />Rainbow Park reach (10 RK); electrofishing was conducted only in Lodore and Whirlpool <br />canyons. <br />Change in numerically dominant native and non-native fishes in reaches was compared <br />among study periods 1994 to 1996, 2002 to 2004, and 2005 and 2006, and reaches to facilitate <br />detection of longitudinal shifts in community composition. We defined relative abundance as <br />the percent composition that a particular species represented in a sample. For electrofishing <br />samples, CPUE was number of fish captured per amount of time sampled. In general, relative <br />13 <br />