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Last modified
7/14/2009 5:01:48 PM
Creation date
5/22/2009 12:31:49 PM
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UCREFRP
UCREFRP Catalog Number
9724
Author
Coggins, L.G., W.E. Pine, C.J. Walters, D.R. VanHaverbeke, D. Ward and H.C. Johnstone.
Title
Abundance trends and status of the Little Colorado River population of humpback chub.
USFW Year
2006.
USFW - Doc Type
North American Journal of Fisheries Management
Copyright Material
YES
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<br />LITTLE COLORADO RIVER HUMPBACK CHUB <br /> <br />235 <br /> <br />TABLE I.-Sample sizes of humpback chub by year, gear type, and location. Values for nets are the numbers of net sets; <br />values for electrofishing are the numbers of shoreline sections (typically 100-400 m in length) sampled. The Colorado River <br />samples were collected in the Little Colorado River inflow reach (approximately 9 Ian upstream and II Ian downstream of the <br />confluence with the Little Colorado River). The little Colorado River samples were collected within 15 Ian of the confluence <br />with the Colorado River. <br /> <br /> Colorada River Little Colorado River <br />Year Electroflshing Trammel netting Hoop netting Trammel netting Hoop netting <br />1987 85 142 <br />1988 179 399 <br />1989 177 454 <br />1990 20 142 73 356 <br />1991 231 1,076 4 319 2,826 <br />1992 407 847 198 3,712 <br />1993 558 1.104 15 146 4,602 <br />1994 37 19 2 103 3,885 <br />1995 137 71 2,371 <br />1996 89 122 4 1.114 <br />1997 89 163 20 936 <br />1998 70 42 372 27 1,435 <br />1999 106 54 550 12 1.046 <br />2000 225 344 284 7 2,700 <br />2001 47 1,098 605 64 2,651 <br />2002 168 120 199 I 2,998 <br />2003 119 100 108 8 2.786 <br />Total 2,303 5,231 2.139 1,494 34,413 <br /> <br />integrated transponder (PIT) tags to provide a unique, <br />long-term identification mark. Capture-recapture data <br />were used in a simple, two-sample closed-population <br />model to estimate population size (N) and two Jolly- <br />Seber-type open-population models to generate esti- <br />mates of capture probability (fJ), rate of population <br />change (),.), and population size (Seber 1982; Williams <br />et al. 2(02). We used an extension of the Jolly-Seber <br />population model to incorporate information on age at <br />first capture (pollock 1981) to estimate mortality, <br />capture probability, and LCR population size with the <br />program MARK (White and Burnham 1999). We also <br />used methods presented by Pradel (1996) to estimate <br />the rate of population change directly without having to <br />estimate population size. <br />In addition, we developed a new age-structured, <br />open-population capture-recapture model (ASMR) <br />similar to the Jolly-Seber models but developed <br />specifically to address analysis needs related to this <br />robust capture-recapture data set. The ASMR model <br />predicts age at first capture from length, the numbers of <br />marked and unmarked fish at risk of capture from the <br />age-specific survival rate, and age- and time-specific <br />capture probabilities. Details of the ASMR model are <br />provided in the companion paper in this issue (Coggins <br />et al. 2006, this issue). <br />Model background.--Capture-recapture methods <br />have rigorous assumptions and are broadly defined as <br />"closed" or "open" depending on whether the <br />population is allowed to change over the sample <br />interval (open models) or not (closed models). Short- <br /> <br />term capture-recapture studies are usually closed- <br />population estimates and are based on the assumption <br />that all members of the population are vulnerable to <br />sampling and that no animals leave or enter the <br />population between sampling occasions. Open-popula- <br />tion models allow for changes in the population due to <br />births, deaths, and movement into and out of the area <br />and are generally more suited for longer-tenn studies <br />(Pine et al. 2003). <br />Most multiyear capture~ecapture studies use some <br />variation of the classic open Jolly--Seber model to <br />estimate population size, recruitment, and survival <br />(Jolly 1965; Seber 1965; Pollock et al. 1990). A key <br />assumption of open-population models is that every <br />animal (both marked and unmarked) present in the <br />population during a sampling period has the same <br />probability of being captured. Parameter estimates from <br />open-population models can be biased if capture <br />probabilities are heterogeneous (pollock et al. 1990). <br />In many fisheries applications, much of this heteroge- <br />neity in capture probability is related to animal age. <br />Incorporating age information into the Jolly-Seber <br />model reduces estimation bias by accounting for this <br />heterogeneity in capture probability (pollock 1981; <br />Pollock et al. 1990). <br />Closed-population mode/s.-Between 2001 and <br />2003, we made a series of two-pass, closed-population <br />abundance estimates of humpback chub (TL > 150 <br />mm) in the lower 14.2 km of the LCR during two 12- <br />14-d annual spring sampling trips. Population size and <br />variance were estimated using a Chapman-modified, <br />
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