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<br />328 BIOLOGICAL REPoRT 19 <br /> <br />River was shortened by at least 204 Ian and more <br />than 178 million ha of river channel, erosion zone, <br />floodplain grass and timber, and tributary valley <br />lands were either inundated or converted to crop <br />land (Hesse 1987; Hesse and Schmulbach 1991). <br />At least 160 species of wildlife were resident or <br />migrant visitors to this ecosystem, and 156 native <br />fish species lived in the mainstem and tributaries <br />(Hesse et al. 1988; Hesse et al. 1989). Nebraska's <br />imperiled Missouri River wildlife include the inte- <br />rior least tern. (Sterna antillaro.m), piping plover <br />(Charadrius melodu.s), peregrine falcon (Falco <br />peregrinus), and bald eagle (Hatiaeetus leuco- <br />oophalus), all protected by the Endangered Species <br />Act (ESA). The pallid sturgeon (Srophirhynchus <br />albus) was most recently (1990) listed as endan- <br />gered (Federal Register 55 (173):36641). Other spe- <br />cies have been federally listed as Category 2 (taxa <br />for which present information indicates the possi- <br />ble need to list, but more information is required <br />before listing can proceed), including: blue sucker <br />(Cycleptus elongatus), sturgeon chub (Macrhybop- <br />sis gelida), sicklefin chub (Macrhybopsis meeki), <br />and lake sturgeon (Acipenser fluvesoens). Paddle- <br />fish (Polyodon spathula) is a Category 2 species and <br />was recently proposed for listing in the Convention <br />on International Trade in Endangered Species of <br />Wild Fauna and Flora (CITES; Federal Register <br />56 (142):33894). <br />This paper discusses (1) differences in density <br />of selected fish species over time and between <br />reaches of the Missouri River, based on changing <br />harvest by sport and commercial fishermen and on <br />catch per unit effort (CPUE) from biological sur-- <br />veys, and (2) remedial actions that will preserve <br />and restore original features and functions of the <br />Missouri River as an ecosystem. <br /> <br />Sources of Data and Methods <br /> <br />The Nebraska Game and Parks Commission has <br />supported research on Missouri River fisheries <br />since the late 1950's. Historical databases exist <br />from seining, explosives, creel surveys, commercial <br />fishing reports, electrofishing, gill netting, and <br />plankton drift netting. <br />Many other methods were used to collect in <br />unique situations. These methods are discussed in <br />Mestl and Hesse (1991). Seine samples are reported <br />as the number of fish per seine haul. One standard <br />seine haul constituted a perpendicular extension of <br />a 15.24- x 1.83-m bag seine, followed by an extended <br /> <br />1 <br />,ti.. <br />"~, <br /> <br /> <br />drag to shore while maintaining one end of the net <br />stationary. However, standardizing a seine haul <br />was very difficult because of varying depth and the <br />condition of the substrate. Mesh size was always <br />6.13 mm. All seined fish were preserved and iden- <br />tified in the laboratory. Cyprinids and catfish were <br />collected from tributary streams with an explosive <br />(primacord). A unit of effort consisted of a 15.2-m <br />length of explosive, containing 162.5 grains of <br />PErN/m. Bankline and sandbar habitats were <br />sampled. A block net was used to capture fish killed <br />by the blast. Angler surveys have been conducted <br />periodically in the tailwater of Gavins Point Dam <br />and at selected locations downriver since 1956. The <br />most recent survey was a recreational use survey <br />conducted during 1992. <br />Commercial fishers were first required to pur- <br />chase a license and report their catch beginning in <br />1944 (Nebraska) and 1945 (Missouri). Although <br />reports were required, they were completed annu- <br />ally, and by fishers themselves, with little oppor- <br />tunity for verification. However, we believe these <br />reports are useful to show trends in abundance of <br />selected species based on harvest trends. <br />Boat-mounted electrofishing (AC and DC) has <br />been used since the early 1960's to collect a wide <br />range of species. We have observed different catch <br />rates associated with the widely varying water <br />quality conditions throughout the river. For this <br />reason only catch per unit effort (CPUE) that dif- <br />fered widely is reported. Small differences cannot <br />be justifiably assigned to changing conditions of <br />habitat and water management. Collections were <br />based on time spent sampling, and CPUE was the <br />number of fish per unit of time spent electrofishing. <br />Experimental gillnet collections were usually <br />limited to the unchannelized Missouri River be- <br />tween Fort Randall Dam and Lewis and Clark Lake <br />(Gavins Point Dam; Figure). This is the only reach <br />in Nebraska with extensive off-channel and sand- <br />bar pool habitat remaining. The nets were either 91 <br />m or 61 m long, and 2.44 m deep, with six equal <br />length panels of netting ranging from 12.7-mm to <br />76.2-mm mesh sizes. Nets were anchored late in the <br />aftem.oon and retrieved early the next day. Data <br />were recorded by net length, and CPUE was the <br />number of fish caught per net-night. <br />Larval fish were filtered from the main channel <br />at cutting and filling banks and at mid-channel <br />with paired, 1-m-diameter plankton nets (560 mi- <br />crons). Flow meters in the net mouths were used to <br />~anWYvmumemwaterffitere~anddmati~per <br />tow was minimal to prevent net clogging. The <br /> <br />~" <br />f <br />