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850 JULIAN D. OLDEN ET AL. Ecology, Vol. 89, No. 3 <br />altered physical habitat conditions, predation by non- <br />native fishes, competition with nonnative fishes, or other <br />biological interactions, e.g., hybridization or disease). <br />From the questionnaire results we used a majority rule <br />to place each species into one of five categories that <br />combined perceived level of extinction risk and primary <br />source of threat over their lifetime (Appendix B): (1) <br />none/low risk; (2) moderate risk-environmental degra- <br />dation (first three sources listed above); (3) moderate <br />risk-species invasions (last three sources listed above), <br />(4) high risk-environmental degradation, and (5) high <br />risk-species invasions. We assessed inter-respondent <br />reliability by comparing the actual assignment to <br />random assignments of the species to the five extinction <br />level-source categories according to Fleiss' kappa (1971). <br />Fleiss' kappa is interpreted as the extent to which the <br />observed amount of agreement among raters exceeds <br />what would be expected if all raters made their ratings <br />completely randomly (complete agreement then x = 1, <br />no agreement then x < 0). For the 22 fish species, we <br />found that x = 0.41 (representing a mean concordance <br />among participants of 66.8%); a value significantly <br />greater than chance (P = 0.038). This indicates good <br />inter-respondent consistency for assigning species to one <br />of the five extinction level-source categories. <br />Statistical analyses <br />We used classification and regression trees (CART; <br />Breiman et al. 1984) to model species' rarity (expressed <br />as total kilometers of stream reaches occupied), fre- <br />quency of local extirpation (probability between 0 and <br />1), and perceived level and source of extinction risk (five <br />nominal categories) as functions of the 10 biological <br />traits and two indices of phylogenetic relatedness. <br />CART is particularly powerful for ecological analyses <br />because it allows the modeling of nonlinear, nonadditive <br />relationships among mixed variable types, it is invariant <br />to monotonic transformations of the data that are often <br />required prior to using traditional methods, and it <br />facilitates the examination of intercorrelated variables in <br />the final model (De'ath and Fabricius 2000). Thus, the <br />CART methodology is well suited for analyzing trait <br />synergisms among inherently correlated biological traits <br />that are both continuous and categorical. <br />The CART methodology uses a recursive partitioning <br />algorithm to repeatedly partition the data set according <br />to the explanatory variables (i.e., biological traits) into a <br />nested series of mutually exclusive groups, each as <br />homogeneous as possible with respect to the response <br />variable (i.e., rarity, extirpation, extinction). The <br />branching topology of the resulting decision tree reveal <br />nonadditive (or synergistic) trait effects, and the primary <br />splits represent the most important predictor traits as <br />well as indicating the best competitive traits (called <br />surrogate splits) that show similar classification power. <br />Therefore, the CART methodology has the favorable <br />characteristic of allowing the simultaneous examination <br />of biological traits (e.g., age and length at maturity) that <br />may have similar predictive roles in the final model. We <br />used the Gini impurity criterion to determine the <br />optimal variable splits (minimum parent node size: n = <br />5; minimal terminal node size: n = 2), and we determined <br />the optimal size of the decision tree by constructing a <br />series of cross-validated trees and selecting the smallest <br />tree based on the one-standard-error rule (De'ath and <br />Fabricius 2000). Cohen's x coefficient of agreement <br />(classification tree) and Pearson's moment correlation <br />coefficient (regression tree) were used to assess the <br />predictive performance of the decision trees compared to <br />random expectations (Fielding and Bell 1997). Analyses <br />were conducted using CART 5.0 (Salford Systems, San <br />Diego, California, USA). <br />RESULTS <br />Rarity <br />Species rarity varied as a function of ecological and <br />life-history traits (R = 0.72, P = 0.0002, Fig. 1). The <br />branching sequence of the regression tree indicates that <br />trophic specialization and reproductive strategy were the <br />most important trait predictors of species' present-day <br />range size (inversely related to rarity). Species with an <br />herbivore/detritivore feeding behavior--considered a <br />generalist trophic guild that consumes living and dead <br />plant matter in benthic habitats-were three times more <br />widespread compared to the other species (Fig. 1, node <br />A). Of the species in the remaining trophic guilds (n = <br />18), two groups had high rarity: those providing a low <br />degree of parental care (surrogate split: non-guarders <br />spawning on open substrates, i.e., low energetic contri- <br />butions to reproduction with respect to guarding and <br />nest building; node B), and those having high parental <br />care coupled with low diet breadth (node Q. In contrast, <br />species characterized by relatively high parental care and <br />high diet breadth occupied considerably larger ranges <br />(node D). <br />Because the regression tree was optimized to separate <br />species into relatively homogenous groups with respect <br />to their level of rarity, it is useful to examine species that <br />contribute the greatest to terminal node impurity (i.e., <br />model error). By comparing predicted to actual species <br />range sizes (Appendix C), we found that the range sizes <br />of Catostomus clarkii (desert sucker, node A) and Gila <br />robusta (roundtail chub, node B) were underestimated <br />by the model (i.e., according to the model these species <br />should exhibit greater rarity), whereas the range sizes of <br />C. latipinnis (flannelmouth sucker, node A), Oncorhyn- <br />chus gilae apache (Gila trout, node C) and Poeciliopsis <br />occidentalis (Gila topminnow, node D) were overesti- <br />mated by the model (i.e., according to the model these <br />species should exhibit lower rarity). <br />Frequency of extirpation <br />Species frequency of local extirpation was highly <br />predictable as a function of multiple, interacting <br />biological traits (R = 0.87, P < 0.0001, Fig. 2). Fish <br />species with the highest frequency of local extirpation